foldchange Calculate fold change from rpm scaled data.

foldchange Calculate fold change from rpm scaled data.

foldchange(rpm_control, rpm_sample, binsize = 300, ignore_cols = c())

Arguments

rpm_control

Reads per million (counts per million) data frame of control data from which to determine bins (e.g. beads only). Peptide order should match that of rpm_sample.

rpm_sample

Reads per million (counts per million) data frame of sample data for which to calculate z-scores. Peptide order should match that of rpm_control

binsize

Number of peptides per bin (default 300)

ignore_cols

Column names to exclude from calculation (e.g. id column)