new_pro_fun

calculate prosum, promax, pro_breadth -- like polyclonal but not redundancy collapsed

new_pro_fun(
  zscore_df,
  protein_split,
  method = c("sum", "max", "breadth"),
  z_thresh = 5
)

Arguments

zscore_df

data frame of zscores

protein_split

character vector ewqual to number of rows in zscore df indicating which peptides belong to which proteins

method

whether to sum values across peptides, max, or take number of peptides above a threshold

z_thresh

threhold above which to count as scoring for method="breadth