compute_polycl.Rd
For multilibrary hits data, identify libraries, and call library_polycl for each.
compute_polycl(data, annot, pairs, method = "independence_filter", verbose = TRUE, parallel = FALSE)
data | List with first element a character vector of library names and subsequent elements data frames of data for corresponding libraries. |
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annot | Phiplist of annotation files. |
pairs | Phiplist of blast alignment pair files. |
method | Character string signifying which scoring method to use for evaluation. independence_filter or old_method. |
verbose | Logical whether or not to print progress. |
parallel | Logical whether or not to use future and future.apply to parallelize individual library computations. |