For multilibrary hits data, identify libraries, and call library_polycl for each.

compute_polycl(data, annot, pairs, method = "independence_filter",
  verbose = TRUE, parallel = FALSE)

Arguments

data

List with first element a character vector of library names and subsequent elements data frames of data for corresponding libraries.

annot

Phiplist of annotation files.

pairs

Phiplist of blast alignment pair files.

method

Character string signifying which scoring method to use for evaluation. independence_filter or old_method.

verbose

Logical whether or not to print progress.

parallel

Logical whether or not to use future and future.apply to parallelize individual library computations.