Initialize and return drake_plan object. New for github drake 7.0+.

Initialize and return drake_plan object. New for github drake 7.0+.

define_plan(params_path = "drake_params.tsv", runCounts = TRUE,
  runPairwise = FALSE, runEnrichment = TRUE, runPolyclonal = TRUE,
  runAVARDA = FALSE)

Arguments

params_path	Path to project parameters file that can be created using the write_drake_params function.
runCounts	Logical controlling whether or not to define counts targets.
runPairwise	Logical controlling whether or not to define pairwise targets.
runEnrichment	Logical controlling whether or not to define enrichment targets.
runPolyclonal	Logical controlling whether or not to define enrichment targets.
runAVARDA	Logical controlling whether or not to define AVARDA targets.