Initialize and return drake_plan object. New for github drake 7.0+.

define_plan(params_path = "drake_params.tsv", runCounts = TRUE,
  runPairwise = FALSE, runEnrichment = TRUE, runPolyclonal = TRUE,
  runAVARDA = FALSE)

Arguments

params_path

Path to project parameters file that can be created using the write_drake_params function.

runCounts

Logical controlling whether or not to define counts targets.

runPairwise

Logical controlling whether or not to define pairwise targets.

runEnrichment

Logical controlling whether or not to define enrichment targets.

runPolyclonal

Logical controlling whether or not to define enrichment targets.

runAVARDA

Logical controlling whether or not to define AVARDA targets.