For one peptide library, identify proteins from annotation file, and then call protein_polycl for each protein.

For one peptide library, identify proteins from annotation file, and then call protein_polycl for each protein.

library_polycl(data, annot, pairs, method = "independence_filter",
  verbose = TRUE)

Arguments

data	Data frame with one library's hits data
annot	Annotation file.
pairs	Data frame of BLAST aligning pairs within each protein.
method	Character string signifying which scoring method to use for evaluation. independence_filter or old_method.
verbose	Logical whether or not to print progress.