library_polycl.Rd
For one peptide library, identify proteins from annotation file, and then call protein_polycl for each protein.
library_polycl(data, annot, pairs, method = "independence_filter", verbose = TRUE)
data | Data frame with one library's hits data |
---|---|
annot | Annotation file. |
pairs | Data frame of BLAST aligning pairs within each protein. |
method | Character string signifying which scoring method to use for evaluation. independence_filter or old_method. |
verbose | Logical whether or not to print progress. |