For one peptide library, identify proteins from annotation file, and then call protein_polycl for each protein.

library_polycl(data, annot, pairs, method = "independence_filter",
  verbose = TRUE)

Arguments

data

Data frame with one library's hits data

annot

Annotation file.

pairs

Data frame of BLAST aligning pairs within each protein.

method

Character string signifying which scoring method to use for evaluation. independence_filter or old_method.

verbose

Logical whether or not to print progress.