prepare_blast_pairs.Rd
Convert BLAST+ alignment table to two outputs. First, a full symmetrical two column table of aligning peptides. Second, a subset of the first, including only intra-protein alignments, for which protein identity is specified by an annotation file.
prepare_blast_pairs(blast.file, annot, name1, name2)
blast.file | directory path to blast file e.g. 1/PhageomeLa_000_BLAST.txt |
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annot | Annotation file. |
name1 | file path & name for all-alignment output file tsv |
name2 | file path & name for intraprotein-alignment output file tsv |