Identifies which of a set of remaining peptides from a blast alignment table should serve as the next index peptide.

Identifies which of a set of remaining peptides from a blast alignment table should serve as the next index peptide.

chooseIndex(input, method = "min")

Arguments

input

Data frame with BLAST alignments.

method

Either "min" or "max": instructs whether chooseIndex should suggest the peptide with the fewest or most alignments, respectively.

Value

Peptide name.