Repeatedly call epitopeBLAST to iterate through all index peptides until all peptides are converted to trimmed epitopes.

cycleBLAST(data, pb, n, aln.size, verbose = FALSE)

Arguments

data

List of BLAST alignment table and fastra file to process.

pb

txtProgressBar object to update

n

Value to update txtProgressBar object.

aln.size

Minimum length of alignment to consider from BLASTp alignments of 'data'.

verbose

Logical whether or not to print status updates to console.

Value

List data containing modified BLAST alignment table and fasta file.