isOverlapping.Rd
Checks whether the stard/end pos in pattern overlaps with the start/end pos of each row in table by at least almin and returns positions in table that overlap.
isOverlapping(pattern, table, aln.size = 7)
IR query pattern sequence positions.
IR reference table positions to check for overlap with pattern.
Minimum allowable overlap considered valid.
Positions in table
that overlap.