Generates tables of reportable data on identified minimal alignments.

Generates tables of reportable data on identified minimal alignments.

outputTable(
  blast,
  fasta.initial,
  groups,
  msacs,
  key_filename,
  summary_filename
)

Arguments

blast

BLAST alignment table to report.

fasta.initial

Starting peptide sequences as AAStringSet.

groups

Groups table of final epitopes to report.

msacs

MSA consensus sequences for each group in order.

key_filename

Epitope Key table filename to write.

summary_filename

Epitope Summary table filename to write.