Initialize a txtProgressBar object with which to call cycleBLAST.

Initialize a txtProgressBar object with which to call cycleBLAST.

pbCycleBLAST(blast, fasta, aln.size, ncycles = "max")

Arguments

blast

BLAST alignment table to process.

fasta

Fasta file of peptide sequences to process.

aln.size

Minimum length of alignment to consider from BLASTp alignments of 'data'.

ncycles

Number of cycles of cycleBLAST to perform.