Call series of functions to standardize BLAST table for computation.

Call series of functions to standardize BLAST table for computation.

prepareBLAST(blast, fasta, aln.size, use.doParallel = FALSE, tofilter = TRUE)

Arguments

blast

Input tidied BLAST table.

fasta

AAstringset object of fasta sequences.

aln.size

Minimum length of alignment to consider from BLASTp alignments of 'data'.

use.doParallel

Logical whether or not to use doParallel parallelization.

tofilter

Logical whether or not to call filterBLAST, which is only necessary during initial setup.