Update BLAST table positions to reflect smaller intervals when a subinterval has been determined as the minimal overlap of alignments to a peptide.

Update BLAST table positions to reflect smaller intervals when a subinterval has been determined as the minimal overlap of alignments to a peptide.

trimEpitopes(data, aln.size, tofilter = FALSE)

Arguments

data

List containing BLAST table and fasta file and index peptide order to process.

aln.size

Minimum length of alignment to consider from BLASTp alignments of 'data'.

tofilter

Binary whether or not to filter BLAST table entries.