Changelog • phipcc

Update help file documentation for phipcc::config_case_control()

Slightly simplified default template used by render_from_template(). Former default template can be used with phipcc::render_from_template(template = system.file("template_case_control_larman.Rmd", package = "phipcc")).
Initial version of config_case_control() implemented to write config.tsv parameter file from R.

added pep_aa term to plan target data_annotated to allow custom column name for amino acid sequence.

added remove_leading_x parameter to fix naming issue for sample IDs starting with a number .E.g. X101.Sample Name is converted to 101.Sample.Name.

Minor changes

Exported necessary data for template to an .Rdata file in /data/ subdirectory. This allows targets to be generated on one computer (e.g. on a high performance cluster) and the report to be generated locally after copying the /data/ directory and running phipcc::render_from_template(import_rdata == TRUE).

Major changes

AVARDA incorporation