performs a first round of calculations on the data such as hit frequency and Fisher's test. These calculations will be used in subsequent graphing.

performs a first round of calculations on the data such as hit frequency and Fisher's test. These calculations will be used in subsequent graphing.

StatsGenerator(case, ctrl, case_rcp, ctrl_rcp, hit_thresh = 10,
  rcp_thresh = 0.95, stat_test = "Fisher", pval_correction = "BH",
  note_range = 1)

Arguments

case

Case data
ctrl

Control data
case_rcp

Case RCP data
ctrl_rcp

Control RCP data
hit_thresh

Enrichment hit threshold.
rcp_thresh

RCP hit threshold.
stat_test

Statistical test. Currently supports "Fisher"
pval_correction

Multiple hypothesis pvalue correction method. BH default.