compute_rcp_list.RdCase and control should be lists of the same length. Each element of the list should contain a data frame for which to compute rcp for/against. Corresponding elements of the case and control lists should be data frames of equal number of rows.
compute_rcp_list(case, ctrl, min_hits = 0, hit_thresh = 0)
| case | Case samples for which to compute RCP. |
|---|---|
| ctrl | Control samples to compute RCP against. |
| min_hits | Numeric, hreshold for number of cases scoring above hit_thresh in original score required to be retained after filtering. By default, min_hits is set to 0 and thus RCP is calculated for all peptides. Setting a nonzero value for min_hits is only recommended if calculating RCP for all peptides is prohibitively slow. |
| hit_thresh | Vector of numeric, threshold value to apply when considering min_hits. hit_thresh is only evaluated if min_hits > 0. |