prepare_clustergram_data.RdProcess hit data for hierarchical clustering.
prepare_clustergram_data(case_rcp, hit_list, binarize_clustergram = TRUE, rcp_thresh = 0.95, sample_field_delimiter = ".", sample_key_field = 4, AVARDA_RCP = NA)
| case_rcp | RCP data from RCPGenerator or compute_rcp_list. |
|---|---|
| hit_list | Subset candidate data from filter_hits or filter_hits_list. |
| binarize_clustergram | Logical controlling whether or not clustergram will be binarized above/below rcp_thresh. |
| rcp_thresh | Threshold value to binarize against if binarize_clustergram == TRUE. |
| sample_field_delimiter | Field delimiter in sample names (column names of case_rcp.) |
| sample_key_field | Which field(s) to retrain from sample names when separated by sample_field delimiter. |
| AVARDA_RCP | Optional AVARDA breadth case RCP data to add to clustergram. |